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Report for Sequence Feature Glyma08g04890

Feature Type:gene_model
Chromosome:Gm08
Start:3482575
stop:3489434
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g04890
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G70730AT Annotation by Michelle Graham. TAIR10: Phosphoglucomutase/phosphomannomutase family protein | chr1:26669020-26673166 REVERSE LENGTH=662 SoyBaseE_val: 0ISS
GO:0000023GO-bp Annotation by Michelle Graham. GO Biological Process: maltose metabolic process SoyBaseN/AISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0005992GO-bp Annotation by Michelle Graham. GO Biological Process: trehalose biosynthetic process SoyBaseN/AISS
GO:0006874GO-bp Annotation by Michelle Graham. GO Biological Process: cellular calcium ion homeostasis SoyBaseN/AISS
GO:0009590GO-bp Annotation by Michelle Graham. GO Biological Process: detection of gravity SoyBaseN/AISS
GO:0019252GO-bp Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process SoyBaseN/AISS
GO:0019255GO-bp Annotation by Michelle Graham. GO Biological Process: glucose 1-phosphate metabolic process SoyBaseN/AISS
GO:0019388GO-bp Annotation by Michelle Graham. GO Biological Process: galactose catabolic process SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0048229GO-bp Annotation by Michelle Graham. GO Biological Process: gametophyte development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0010319GO-cc Annotation by Michelle Graham. GO Cellular Compartment: stromule SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0000287GO-mf Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding SoyBaseN/AISS
GO:0004614GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphoglucomutase activity SoyBaseN/AISS
GO:0016868GO-mf Annotation by Michelle Graham. GO Molecular Function: intramolecular transferase activity, phosphotransferases SoyBaseN/AISS
KOG0625 KOG Phosphoglucomutase JGI ISS
PTHR22573Panther PHOSPHOHEXOMUTASE FAMILY MEMBER JGI ISS
PTHR22573:SF5Panther PHOSPHOGLUCOMUTASE JGI ISS
PF00408PFAM Phosphoglucomutase/phosphomannomutase, C-terminal domain JGI ISS
PF02878PFAM Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JGI ISS
PF02879PFAM Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JGI ISS
PF02880PFAM Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JGI ISS
UniRef100_G7L9S8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phosphoglucomutase n=2 Tax=Medicago truncatula RepID=G7L9S8_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1KQ93UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQ93_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g04890
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g04890
ParalogEvidenceComments
Glyma05g34790 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g04890 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g044100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g04890
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g04890
>Glyma08g04890.1   sequence type=CDS   gene model=Glyma08g04890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCTCTTCAATGTTTCACGCGTTGAGACCACTCCCTTCGATGGACAGAAGCCTGGAACCTCTGGTCTCCGCAAGAAGGTGAAAGTATTCGTGCAACCTCATTACCTCCATAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAGGTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTATTCAGATTATAACTAAAATGTCAGCAGCAAATGGAGTAAGACGTGTTTGGATTGGTCAAAATGGATTACTTTCCACTCCTGCAGTATCTGCTGTTATACGTGAAAAACTTGGAGCTGATGGATCCAGGGCAACAGGTGCATTTATACTGACAGCAAGTCACAATCCCGGTGGCCCTAATGAGGATTTTGGGATTAAATATAATATGGAAAACGGTGGACCTGCACCAGAGGGAATTACTGACAAGATATATGAAAACACAACAACAATTAATGAGTACTTGATTGCTTCAGATCTGCCAGATGTGGATATTACCTCAACAGGTGTTACAAGCTTTACAGGCCCCGGAGGACCATTTGATGTTGAGGTTTTTGATTCAGCAAGTGATTATATAAAATTGATGAAGTCAATTTTTGATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATTCACATTCTGTTATGATGCACTACATGGGGTTGGTGGAGCATATGCAAAGAGTATTTTTGTGGATGAGCTTGGAGCACAAGAAAGCTCTTTACTGAACTGTACACCAAAGGAAGACTTCGGAGGAGGACACCCAGACCCCAATTTGACATATGCAAAAGAGTTGGTTGCTCGTATGGGATTGGGCAAATCCGAACCCCAAGAAGAGCCCCCAGAGTTTGGTGCTGCTTCTGATGGTGATGCAGATCGCAACATGGTTCTTGGTAAAAGGTTTTTTGTCACTCCTTCAGATTCCGTGGCCATTATCGCTGCAAATGCTGTTGAAGCTATACCATACTTTTCTGCTGGTTTAAAGGGTGTTGCCAGGAGCATGCCAACCTCTGCTGCCCTGGATGTTGTTGCCAAACATCTGAATTTGAAATTTTTTGAGGTCCCCACGGGTTGGAAGTTCTTTGGTAATTTAATGGATGCTGGATTATGTTCAGTCTGTGGTGAAGAAAGTTTTGGGACTGGTTCTGACCATATTCGTGAGAAAGATGGAATCTGGGCAGTTTTGGCCTGGCTATCTATACTTGCATATAAAAATAAAGATAAACTTGAAGACAAGCTTGTCACTGTTGAAGACATAGTTCGCCAGCATTGGGCTACTTATGGGCGCCATTATTATACTCGATATGACTATGAAAACGTGGATGCAGGTGCAGCAAAGGAACTGATGGCATATTTGGTCAAGCTGCAGTCCTCACTTTCAGAAGTCAATCAGATTGTTAAGGGGATAAGGTCAGATGTTTCGAATGTTGTCCACGGTGATGAATTTGAGTACAATGATCCTGTGGATGGTTCCATCTCATCACATCAGGGAATCCGATATTTGTTTGAGGATGGATCACGATTGATTTTCCGCCTATCTGGAACTGGATCAGAAGGTGCAACAATTCGATTATACATTGAGCAATATGAGAAGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTTGTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCCGCTCCAACAGTCATTACATGA
Predicted protein sequences of Glyma08g04890
>Glyma08g04890.1   sequence type=predicted peptide   gene model=Glyma08g04890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLFNVSRVETTPFDGQKPGTSGLRKKVKVFVQPHYLHNFVQSTFNALTVEKVRGATLVVSGDGRYFSKEAIQIITKMSAANGVRRVWIGQNGLLSTPAVSAVIREKLGADGSRATGAFILTASHNPGGPNEDFGIKYNMENGGPAPEGITDKIYENTTTINEYLIASDLPDVDITSTGVTSFTGPGGPFDVEVFDSASDYIKLMKSIFDFESIRKLLSSPKFTFCYDALHGVGGAYAKSIFVDELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSEPQEEPPEFGAASDGDADRNMVLGKRFFVTPSDSVAIIAANAVEAIPYFSAGLKGVARSMPTSAALDVVAKHLNLKFFEVPTGWKFFGNLMDAGLCSVCGEESFGTGSDHIREKDGIWAVLAWLSILAYKNKDKLEDKLVTVEDIVRQHWATYGRHYYTRYDYENVDAGAAKELMAYLVKLQSSLSEVNQIVKGIRSDVSNVVHGDEFEYNDPVDGSISSHQGIRYLFEDGSRLIFRLSGTGSEGATIRLYIEQYEKDPSKIGRLSNEALAPLVEVALKLSKMEEFTGRSAPTVIT*






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